{ "_id": "6a181977acfb0bcc41db07de", "Package": "MQMF", "Title": "Modelling and Quantitative Methods in Fisheries", "Version": "0.1.5", "Date": "2023-09-06", "Authors@R": "person(\"Malcolm\",\"Haddon\", email = \"malcolm.haddon@gmail.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-6971-7585\"))", "Description": "Complements the book \"Using R for Modelling and\nQuantitative Methods in Fisheries\" ISBN 9780367469894,\npublished in 2021 by Chapman & Hall in their \"Using R series\".\nThere are numerous functions and data-sets that are used in the\nbook's many practical examples.", "URL": "https://github.com/haddonm/MQMF/", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "NeedsCompilation": "no", "Language": "en-US", "Repository": "https://haddonm.r-universe.dev", "Date/Publication": "2023-09-06 00:50:58 UTC", "RemoteUrl": "https://github.com/haddonm/mqmf", "RemoteRef": "HEAD", "RemoteSha": "f171966258b9dd8d6cdfcc150930cdb45d23cf65", "Packaged": { "Date": "2026-05-28 10:25:45 UTC", "User": "root" }, "Author": "Malcolm Haddon [aut, cre] (ORCID:\n)", "Maintainer": "Malcolm Haddon ", "MD5sum": "6b6ce8ec6c2f513e69c065b13a44a8fc", "_user": "haddonm", "_type": "src", "_file": "MQMF_0.1.5.tar.gz", "_fileid": "ee3e7bf7cf6a874fc4fefc2d18173dfa059f09651e6b65e36d40d7d5e1d8209d", "_filesize": 745129, "_sha256": "ee3e7bf7cf6a874fc4fefc2d18173dfa059f09651e6b65e36d40d7d5e1d8209d", "_created": "2026-05-28T10:25:45.000Z", "_published": "2026-05-28T10:31:19.750Z", "_distro": "noble", "_jobs": [ { "job": 78271489117, "time": 148, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7263543817" }, { "job": 78271489143, "time": 118, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7263534624" }, { "job": 78271489110, "time": 145, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7263537197" }, { "job": 78271489223, "time": 156, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7263536044" }, { "job": 78271071859, "time": 162, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7263496105" }, { "job": 78271489033, "time": 100, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7263528844" }, { "job": 78271489176, "time": 97, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7263528257" }, { "job": 78271489192, "time": 85, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7263524524" }, { "job": 78271489124, "time": 293, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7263589343" } ], "_buildurl": "https://github.com/r-universe/haddonm/actions/runs/26569008442", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/haddonm/mqmf", "_commit": { "id": "f171966258b9dd8d6cdfcc150930cdb45d23cf65", "author": "Malcolm Haddon ", "committer": "Malcolm Haddon ", "message": "Final version before resubmission to CRAN. 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true, "tojson": true }, { "name": "twoindex", "title": "twoindex has orange roughy catches with hypothetical cpue", "object": "twoindex", "class": [ "data.frame" ], "fields": [ "year", "catch", "cpue1", "cpue2" ], "rows": 35, "table": true, "tojson": true } ], "_help": [ { "page": "grapes-ni-grapes", "title": "'%ni%' identifies which element in x is NOT in y", "topics": [ "%ni%" ] }, { "page": "abdat", "title": "abdat A list of fishery data for blacklip abalone", "topics": [ "abdat" ] }, { "page": "addcontours", "title": "addcontours simplifies adding contours to an xy plot of points", "topics": [ "addcontours" ] }, { "page": "addlnorm", "title": "addlnorm estimates a log-normal distribution from output of hist", "topics": [ "addlnorm" ] }, { "page": "addnorm", "title": "addnorm adds a normal distribution to a histogram of a data set.", "topics": [ "addnorm" ] }, { "page": "aicbic", "title": "aicbic returns the AIC and BIC for a given model", "topics": [ "aicbic" ] }, { "page": "altnegLL", "title": "altnegLL calculate the Normal negative log-likelihood", "topics": [ "altnegLL" ] }, { "page": "bce", "title": "bce Baranov catch equation", "topics": [ "bce" ] }, { "page": "bh", "title": "bh represents one version of Beverton-Holt recruitment", "topics": [ "bh" ] }, { "page": "blackisland", "title": "blackisland tagging data from a blacklip abalone population", "topics": [ "blackisland" ] }, { "page": "bracket", "title": "bracket bounds a value on the x-axis and y-axis", "topics": [ "bracket" ] }, { "page": "calcprior", "title": "calcprior return the sum of a vector of constant values as priors", "topics": [ "calcprior" ] }, { "page": "chapter2", "title": "chapter2 The 15 R-code chunks from A Non-Introduction to R", "topics": [ "chapter2" ] }, { "page": "chapter3", "title": "chapter3 The 27 R-code chunks from Simple Population Models", "topics": [ "chapter3" ] }, { "page": "chapter4", "title": "chapter4 The 47 R-code chunks from Model Parameter Estimation", 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using its location in another", "topics": [ "linter" ] }, { "page": "logist", "title": "logist Logistic selectivity function", "topics": [ "logist" ] }, { "page": "magnitude", "title": "magnitude returns the magnitude of numbers in base 10", "topics": [ "magnitude" ] }, { "page": "makelabel", "title": "makelabel generates a label from text and values", "topics": [ "makelabel" ] }, { "page": "mature", "title": "mature alternative logistic function commonly used for maturity", "topics": [ "mature" ] }, { "page": "minnow", "title": "minnow contains weekly growth data for use with seasonal growth curves", "topics": [ "minnow" ] }, { "page": "mm", "title": "mm calculates the predicted Michaelis-Menton length-at-age", "topics": [ "mm" ] }, { "page": "mnnegLL", "title": "mnnegLL generic multinomial negative log-likelihoods", "topics": [ "mnnegLL" ] }, { "page": "negLL", "title": "negLL calculate log-normal log-likelihoods", "topics": [ "negLL" ] }, { "page": "negLL1", "title": "negLL1 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are present", "topics": [ "simpspmM" ] }, { "page": "spm", "title": "spm calculates the dynamics of a Schaefer or Fox model", "topics": [ "spm" ] }, { "page": "spmboot", "title": "spmboot conducts a bootstrap analysis on a spm model", "topics": [ "spmboot" ] }, { "page": "spmCE", "title": "spmCE - calculates the dynamics for multiple cpue time-series", "topics": [ "spmCE" ] }, { "page": "spmphaseplot", "title": "spmphaseplot - plots the phase plot of harvest rate vs biomass", "topics": [ "spmphaseplot" ] }, { "page": "spmproj", "title": "spmproj calculates biomass trajectories for replicate parameters", "topics": [ "spmproj" ] }, { "page": "spmprojDet", "title": "spmprojDet conducts forward projections from known conditions", "topics": [ "spmprojDet" ] }, { "page": "srug", "title": "srug is the Schnute and Richards Unified Growth Curve", "topics": [ "srug" ] }, { "page": "ssq", "title": "ssq a generalized function for summing squared residuals", "topics": [ "ssq" ] }, { "page": 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